My comment on using a Deep Cycle charge was referring to the use of a deep cycle charger, as used for marine or truck applications. These chargers use toroidal transformers and smart electronics that flatten the battery and then recharge it, diagnosing and pulse cycling the input voltage. These chargers are a step up on the standard auto constant feed units and are not much more expensive than the stock charger.
Referring to the comment that the car runs smoother with a fully topped up battery is simple enough. The alternator is essentially off and the engine has less drag on it, as it has little or nothing to do.
Interestingly my 9-3 Hirsch has a new Calcium battery in it. Wow. Massive current capability and it is half the weight, among all the environmental benefits. Cranking speed is very fast. Lots of punch.
"...that flatten the battery and then recharge it..." May I just emphasise that it is not a good idea to deliberately fully discharge a lead-acid car battery and then recharge it. Car batteries have a different internal structure to alternative designs of lead-acid battery which are designed to better withstand full cycles of almost complete discharge and then recharge. If you explore and read all the information in the link I previously provided, you will see that if you "deep cycle" a normal car battery, you will likely just get a dozen cycles out of it before it fails. A battery designed to better withstand deep discharge (with a different thicker plate structure -- such as some "marine" batteries that you mention) will give you more than a hundred deep discharge-recharge cycles. The trade off is that it will not supply such a high (short term -- for seconds) instantaneous current eg. 600-800 amps relative to the same size of battery that you get with a common car battery. [This is the CCA figure you see on car batteries.] The high current capability is useful for turning over your starter motor.
Take home message:- DO NOT DEEP DISCHARGE YOUR CAR BATTERY IF YOU CAN AVOID DOING SO. You will seriously shorten its life.
Some truck batteries have a mixed mode internal plate design to allow for deep discharge and also deliver a high short term current capability [CCA]. The "calcium" type lead-acid battery has nothing to do with how much CCA (cold cranking amperes) it can deliver -- this is determined by how finely granular and therefore surface area the plates have. The calcium alloy just helps to delay corrosion on the plates -- one factor affecting battery life. Incidentally, "calcium" lead-acid batteries tend to show 5% higher voltage for the same level of charge. This is a function of the physics of the materials.
Lastly, I don't think the alternator affects the smoothness of the engine. It is permanently attached and engaged via the drive belt and spins all the time. Because of, and relative to the mass and inertial momentum of the spinning internal components it matters little in terms of loading whether you draw a current or not. It is available all the time. It is only the air conditioning compressor which has a clutch which disengages the compressor when it is not needed and makes a measurable difference (albeit small) to the load on the engine.
Regards.